Dockground

Docking Benchmarks for Models Set 1



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# PDB_ID Chain_ID Name 1A 2A 3A 4A 5A 6A
1. 1ACB E ALPHA-CHYMOTRYPSIN 1.13 2.16 3.00 4.04 5.12 6.06
I EGLIN C 1.01 2.10 2.89 3.97 5.05 6.06
2. 1ARO L T7 LYSOZYME 1.04 1.85 3.04 4.15 5.06 5.92
P T7 RNA POLYMERASE 1.15 1.96 3.13 3.95 4.94 6.11
3. 1AVW A TRYPSIN 1.05 2.00 2.95 3.99 4.93 5.99
B TRYPSIN INHIBITOR 1.04 1.94 3.00 4.01 5.01 5.90
4. 1BVN P PROTEIN (ALPHA-AMYLASE) 1.05 2.13 3.02 4.17 4.97 6.05
T PROTEIN (TENDAMISTAT) 0.95 2.02 2.99 4.11 4.93 5.99
5. 1CGJ E ALPHA-CHYMOTRYPSINOGEN 1.01 1.90 3.03 3.96 5.02 5.99
I PANCREATIC SECRETORY TRYPSIN INHIBITOR (KAZAL TYPE) VARIANT 4 0.97 2.20 2.97 3.98 5.16 5.86
6. 1CSE E SUBTILISIN CARLSBERG 1.12 2.00 3.00 4.05 4.94 6.08
I EGLIN C 0.99 2.18 2.80 4.14 4.95 6.05
7. 1D6R A TRYPSINOGEN 0.96 1.99 2.98 4.08 4.98 5.81
I BOWMAN-BIRK PROTEINASE INHIBITOR PRECURSOR 1.01 2.05 3.07 3.98 5.02 5.99
8. 1DFJ E RIBONUCLEASE A 0.99 2.10 2.93 4.02 4.98 5.79
I RIBONUCLEASE INHIBITOR 1.06 1.97 3.05 4.05 5.16 6.00
9. 1E6E A NADPH:ADRENODOXIN OXIDOREDUCTASE 1.12 1.99 2.91 4.08 5.09 6.07
B ADRENODOXIN 1.04 2.01 3.13 3.99 5.01 5.93
10. 1E96 A RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1 1.03 1.93 2.96 3.95 4.93 6.14
B NEUTROPHIL CYTOSOL FACTOR 2 (NCF-2) TPR DOMAIN, RESIDUES 1-203 0.93 2.03 2.93 4.16 4.90 6.00
11. 1F34 A PEPSIN A 1.00 2.03 2.88 4.15 4.99 6.02
B MAJOR PEPSIN INHIBITOR PI-3 0.96 1.84 3.04 3.94 5.12 6.00
12. 1F7Z A TRYPSIN II, ANIONIC 1.03 2.02 3.02 4.03 5.05 6.03
I PANCREATIC TRYPSIN INHIBITOR 0.98 1.92 3.09 4.03 5.18 6.09
13. 1FM9 A RETINOIC ACID RECEPTOR RXR-ALPHA 0.99 2.00 2.95 3.99 4.96 5.98
D PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA 1.02 2.04 3.08 4.01 4.96 6.17
14. 1FQ1 A CYCLIN-DEPENDENT KINASE INHIBITOR 3 1.15 1.98 3.03 3.81 5.13 6.16
B CELL DIVISION PROTEIN KINASE 2 1.05 1.94 3.06 3.98 5.02 6.01
15. 1FQJ A CHIMERA OF GUANINE NUCLEOTIDE-BINDING PROTEIN G(T), ALPHA-1 SUBUNIT AND GUANINE NUCLEOTIDE-BINDING PROTEIN G(I), ALPHA-1 SUBUNIT 1.01 2.04 2.80 4.13 5.00 6.01
B REGULATOR OF G-PROTEIN SIGNALING 9 1.00 2.08 2.86 4.00 4.87 6.02
16. 1GCQ B GROWTH FACTOR RECEPTOR-bound PROTEIN 2 0.98 2.00 2.98 4.06 4.98 6.09
C VAV PROTO-ONCOGENE 0.97 2.19 2.99 4.00 5.01 6.02
17. 1H1V A ACTIN 1.04 2.02 3.01 4.04 5.02 6.07
G GELSOLIN 0.87 2.02 3.01 3.98 5.17 5.90
18. 1HE8 A PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT, GAMMA ISOFORM 1.00 2.03 3.01 3.99 4.97 5.98
B MOLNAME2 1.00 2.01 3.00 3.93 4.92 6.13
19. 1I2M A GTP-BINDING NUCLEAR PROTEIN RAN 0.93 1.84 2.97 3.92 5.00 5.98
B REGULATOR OF CHROMOSOME CONDENSATION 1 1.02 2.01 2.91 4.01 5.06 6.00
20. 1IRA X INTERLEUKIN-1 RECEPTOR ANTAGONIST 0.98 1.81 2.92 4.00 4.99 5.98
Y INTERLEUKIN-1 RECEPTOR 0.95 1.96 3.08 4.10 4.96 6.04
21. 1K93 A CALMODULIN-SENSITIVE ADENYLATE CYCLASE 1.09 2.19 2.97 4.10 5.11 5.99
B CALMODULIN-SENSITIVE ADENYLATE CYCLASE 0.99 2.14 3.08 4.01 5.08 5.93
22. 1KAC A PROTEIN (FIBER KNOB PROTEIN) 1.09 2.01 2.91 3.81 4.81 5.97
B PROTEIN (COXSACKIE VIRUS AND ADENOVIRUS RECEPTOR) 1.10 2.04 3.09 3.97 4.99 5.99
23. 1KTZ A TRANSFORMING GROWTH FACTOR BETA 3 1.01 2.05 2.85 4.06 5.15 5.88
B TGF-BETA TYPE II RECEPTOR 0.95 1.92 3.00 4.15 4.88 6.10
24. 1KU6 A ACETYLCHOLINESTERASE 0.98 2.02 2.96 3.98 4.96 6.07
B FASCICULIN 2 1.02 2.00 3.00 4.03 5.01 5.81
25. 1M27 A SH2 DOMAIN PROTEIN 1A 0.97 2.05 2.98 4.04 4.92 5.96
C PROTO-ONCOGENE TYROSINE-PROTEIN KINASE FYN 1.01 2.00 3.01 3.95 5.07 6.13
26. 1MA9 A VITAMIN D-BINDING PROTEIN 1.02 2.02 2.89 3.82 4.89 5.99
B ACTIN, ALPHA SKELETAL MUSCLE 1.13 2.11 3.10 3.99 4.99 5.87
27. 1NW9 A BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4 0.91 2.04 2.95 3.93 5.02 6.02
B CASPASE 9, APOPTOSIS-RELATED CYSTEINE PROTEASE 0.98 1.94 3.06 4.03 5.03 5.93
28. 1OPH A ALPHA-1-ANTITRYPSIN PRECURSOR 1.01 2.02 2.97 4.01 4.85 6.01
B TRYPSINOGEN, CATIONIC PRECURSOR 0.96 2.03 2.97 4.08 4.92 6.01
29. 1PPE E TRYPSIN 1.02 1.99 2.99 4.07 4.97 6.19
I TRYPSIN INHIBITOR CMTI-I 1.02 1.83 3.03 4.02 4.95 6.03
30. 1PPF E HUMAN LEUKOCYTE ELASTASE 1.14 2.00 3.01 4.01 4.90 5.91
I TURKEY OVOMUCOID INHIBITOR (OMTKY3) 1.02 2.19 3.01 3.95 4.86 5.88
31. 1QA9 A HUMAN CD2 PROTEIN 1.19 1.85 3.04 3.99 4.98 6.08
B HUMAN CD58 PROTEIN 0.92 2.17 3.15 4.02 5.01 6.00
32. 1QBK B KARYOPHERIN BETA2 0.98 1.79 2.97 4.14 5.00 6.13
C RAN 1.02 2.15 3.04 3.94 4.86 6.04
33. 1R0R E SUBTILISIN CARLSBERG 1.13 2.02 3.03 4.00 5.01 6.08
I OVOMUCOID 1.09 2.00 2.96 4.01 5.02 6.00
34. 1R8S A ADP-RIBOSYLATION FACTOR 1 1.05 2.01 3.13 3.99 4.98 6.01
E ARNO 1.02 2.09 3.01 4.08 5.13 6.02
35. 1SHW A EPHRIN-A5 0.94 2.05 3.16 3.91 5.10 6.01
B EPHRIN TYPE-B RECEPTOR 2 0.99 1.86 3.12 4.06 5.18 6.01
36. 1SQ0 A VON WILLEBRAND FACTOR (VWF) [CONTAINS: VON WILLEBRAND ANTIGEN II] 1.03 1.95 2.99 3.97 5.05 5.99
B PLATELET GLYCOPROTEIN IB ALPHA CHAIN (GLYCOPROTEIN IBALPHA) (GP-IB ALPHA) (GPIBA) (GPIB-ALPHA) (CD42B-ALPHA) (CD42B) [CONTAINS: GLYCOCALICIN] 0.96 2.19 3.03 4.05 5.02 5.99
37. 1T6B X PROTECTIVE ANTIGEN 1.04 2.04 3.02 4.02 5.20 6.03
Y ANTHRAX TOXIN RECEPTOR 2 0.93 2.01 2.91 3.97 4.98 6.00
38. 1TMQ A PROTEIN (ALPHA-AMYLASE) 1.19 2.07 3.04 4.03 5.09 5.94
B PROTEIN (RAGI BIFUNCTIONAL INHIBITOR) 0.94 1.83 3.11 4.01 4.96 6.10
39. 1TX4 A P50-RHOGAP 0.99 2.06 3.05 3.96 4.97 5.95
B TRANSFORMING PROTEIN RHOA 0.95 1.96 2.99 4.02 5.02 5.98
40. 1WQ1 G P120GAP 0.89 2.18 3.08 4.03 4.89 5.84
R H-RAS 1.00 2.00 2.97 3.97 4.98 5.90
41. 1XQS A HSPBP1 PROTEIN 0.94 2.09 3.01 4.09 5.00 6.03
C HEAT SHOCK 70 KDA PROTEIN 1 0.96 2.08 2.92 4.03 5.02 6.06
42. 1Y64 A ACTIN, ALPHA SKELETAL MUSCLE 0.98 2.03 2.90 3.98 4.96 6.14
B BNI1 PROTEIN 0.98 1.90 3.17 3.84 5.03 5.89
43. 1Z5Y D THIOL:DISULFIDE INTERCHANGE PROTEIN DSBD 1.03 2.00 3.03 3.85 5.02 6.00
E THIOL:DISULFIDE INTERCHANGE PROTEIN DSBE 0.86 2.04 2.98 4.04 5.08 6.01
44. 1ZHI A ORIGIN RECOGNITION COMPLEX SUBUNIT 1 1.02 2.07 3.04 3.87 4.90 6.10
B REGULATORY PROTEIN SIR1 0.98 2.01 2.88 3.95 4.81 6.04
45. 2A42 A ACTIN, ALPHA SKELETAL MUSCLE 1.03 1.97 2.87 4.00 4.84 6.11
B DEOXYRIBONUCLEASE-1 0.87 2.09 3.03 3.88 4.91 5.96
46. 2A5T A N-METHYL-D-ASPARTATE RECEPTOR NMDAR1-4A SUBUNIT 1.03 2.09 2.99 3.89 5.00 6.00
B N-METHYL-D-ASPARTATE RECEPTOR NMDAR2A SUBUNIT 1.02 2.04 3.02 4.11 5.03 6.03
47. 2B12 A CYTOCHROME C PEROXIDASE, MITOCHONDRIAL 0.90 2.06 3.01 3.98 4.89 6.00
B CYTOCHROME C ISO-1 1.08 2.05 3.10 4.09 5.02 6.11
48. 2B42 A XYLANASE INHIBITOR-I 1.03 1.97 2.95 4.08 4.82 6.08
B ENDO-1,4-BETA-XYLANASE A 1.03 2.03 3.01 3.91 4.86 6.03
49. 2BKH A UNCONVENTIONAL MYOSIN 1.10 2.00 3.01 3.97 4.99 6.04
B CALMODULIN 1.17 2.04 2.93 3.96 4.96 5.89
50. 2C0L A PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR 1.08 2.01 3.08 4.08 5.04 6.14
B NONSPECIFIC LIPID-TRANSFER PROTEIN 0.90 2.00 2.87 4.09 4.88 5.94
51. 2CFH A TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3 0.91 2.20 2.97 4.20 5.05 5.99
C TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B 1.00 2.00 3.04 3.83 5.00 5.92
52. 2GY7 A ANGIOPOIETIN-2 1.04 1.99 3.10 4.00 5.19 5.85
B ANGIOPOIETIN-1 RECEPTOR 1.03 1.93 2.93 3.97 5.10 5.91
53. 2H7V A MIGRATION-INDUCING PROTEIN 5 1.00 2.02 3.01 4.01 5.00 6.08
C PROTEIN KINASE YPKA 0.82 2.09 3.12 4.07 5.12 6.05
54. 2HLE A EPHRIN TYPE-B RECEPTOR 4 0.90 1.95 2.98 4.04 4.99 6.02
B EPHRIN-B2 0.98 2.00 2.87 4.14 5.07 6.00
55. 2HQS A PROTEIN TOLB 1.06 1.99 2.86 3.81 4.90 5.88
H PEPTIDOGLYCAN-ASSOCIATED LIPOPROTEIN 1.02 2.15 2.80 3.94 5.04 5.96
56. 2JB0 A COLICIN E7 IMMUNITY PROTEIN 0.97 1.99 2.84 4.08 4.87 5.99
B COLICIN E7 0.99 1.94 2.87 4.00 5.02 5.98
57. 2NZ8 A RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1 ISOFORM RAC1 1.15 2.02 3.05 3.99 5.02 6.06
B TRIPLE FUNCTIONAL DOMAIN PROTEIN 0.95 1.98 2.82 4.00 4.97 6.14
58. 2O8V A PHOSPHOADENOSINE PHOSPHOSULFATE REDUCTASE 1.01 2.02 2.81 3.93 4.99 6.04
B THIOREDOXIN 1 0.99 2.09 3.02 4.02 4.94 6.11
59. 2OOB A E3 UBIQUITIN-PROTEIN LIGASE CBL-B 0.97 2.03 2.96 3.85 5.03 5.91
B UBIQUITIN 1.00 2.06 2.93 3.82 5.07 5.98
60. 2OT3 A MOLNAME1 0.87 2.08 3.12 4.06 5.00 5.93
B RAS-RELATED PROTEIN RAB-21 1.07 2.12 2.97 3.95 5.01 6.04
61. 2PAV A ACTIN, ALPHA SKELETAL MUSCLE 0.96 1.97 3.01 4.16 4.96 6.04
P PROFILIN-1 1.00 1.87 3.07 4.17 5.09 6.10
62. 2UUY A CATIONIC TRYPSIN 0.99 2.00 2.99 4.02 4.98 5.98
B TRYPTASE INHIBITOR 1.07 1.94 2.93 3.94 5.05 5.96
63. 3SIC E SUBTILISIN BPN' 1.00 2.15 3.01 4.14 5.01 6.04
I STREPTOMYCES SUBTILISIN INHIBITOR (SSI) 1.15 1.81 2.92 4.02 5.01 6.00

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