Datasets
Unbound
Templates
Other Resources
Downloads
Repository Status
5/26/2022
Docking Benchmarks
| Set | Number of complexes |
|---|---|
| X-ray Unbound Set 1 | 92 |
| X-ray Unbound Set 2 | 242 |
| X-ray Unbound Set 3 | 233 |
| X-ray Unbound Set 4 | 396 |
| Simulated Unbound Set 1 | 3205 |
| Models Set 1 | 63 x 6 |
| Models Set 2 | 165 x 6 |
| Models Set Q1 | 171 x 5 |
| Models Set Q2 | 963 x 5 |
Docking Templates
| Set | Number of complexes |
|---|---|
| Full Structures 1.0 | 5050 |
| Interfaces 1.0 | 7107 |
| Full Structures 1.1 | 4950 |
| Interfaces 1.1 | 5936 |
| Full Structures 2.0 | 12470 |
| Interfaces 2.0 | 12431 |
Docking Decoys
| Set | Number of complexes |
|---|---|
| X-ray Unbound Set 1 | 101 x 61 |
| X-ray Unbound Set 2 | 100 x 396 |
| Model Set 1 | 100 x 165 x 6 |
References
DOCKGROUND should be cited as:
Kundrotas PJ, Anishchenko I, Dauzhenka T, Kotthoff I, Mnevets D, Copeland MM, Vakser IA Dockground: A comprehensive data resource for modeling of protein complexes. Protein Sci 2018, 27:172-181Other DOCKGROUND publications:
- Douguet D, Chen H, Tovchigrechko A, Vakser IA Dockground resource for studying protein-protein interfaces. Bioinformatics 2006, 22:2612-2618
- Gao Y, Douguet D, Tovchigrechko A, Vakser IA Dockground system of databases for protein recognition studies: Unbound structures for docking. Proteins 2007, 69:845-851
- Liu S, Gao Y, Vakser IA Dockground protein-protein docking decoy set. Bioinformatics 2008, 24:2634-2635
- Anischenko I, Kundrotas PJ, Tuzikov AV, Vakser IA Protein models: The Grand Challenge of protein docking. Proteins 2014, 82:278-287
- Anischenko I, Kundrotas PJ, Tuzikov AV, Vakser IA Protein models docking benchmark 2. Proteins 2015, 83:891-897
- Anischenko I, Kundrotas PJ, Tuzikov AV, Vakser IA Structural templates for comparative protein docking. Proteins 2015, 83:1563-1570
- Kirys T, Ruvinsky AM, Singla D, Tuzikov AV, Kundrotas PJ, Vakser IA Simulated unbound structures for benchmarking of protein docking in the Dockground resource. BMC Bioinformatics 2015, 16:243